PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6123_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 163aa    MW: 17968.5 Da    PI: 10.7329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6123_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-2080134155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l+g
  RrC6123_p1  80 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLNG 134
                 59********.**********54433367**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-371161IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.9E-1981143IPR016177DNA-binding domain
PfamPF008471.9E-1381134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2781142IPR001471AP2/ERF domain
SMARTSM003802.0E-3081148IPR001471AP2/ERF domain
PROSITE profilePS5103221.91881142IPR001471AP2/ERF domain
CDDcd000187.05E-2382141No hitNo description
PRINTSPR003672.2E-118293IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSG EEEAEEVSEA SHARRRGKRL VKKIVIDPSD SDNKLDVCKT  60
RFKIRIPPEF LKATAAKGKK KFRGVRQRPW GKWAAEIRCG RALKGRRDRL WLGTFDTAEE  120
AALAYDNAAV QLNGPHAPTN FSFPAGNQEV KMVAGASAVA RGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1676141162ATERF1
3gcc_A3e-1676141162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894010.0AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.11e-102PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9952e-86ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLM4CIA31e-102M4CIA3_BRARP; Uncharacterized protein
STRINGBra003936.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.13e-66ERF family protein